tomwer.core.process.reconstruction.nabu.nabuslices.run_slices_reconstruction

tomwer.core.process.reconstruction.nabu.nabuslices.run_slices_reconstruction(scan, config, dry_run=False, advancement=None, process_id=None, instanciate_classes_only=False)

call nabu for a reconstruction on scan with the given configuration

Parameters:

• scan (TomwerScanBase) – scan to reconstruct

• config (dict) – configuration to run the reconstruction. Contains nabu reconstruction parameters and slurm cluster configruation if requested (key: slurm-cluster).

• dry_run (bool) – do we want to run dry

• local – do we want to run a local reconstruction

• stderr – file to redirect stderr

• stdout – file to redirect stdout

• advancement – optional Progress class to display advancement

• process_id (Optional[int]) – optional process id

• instanciate_class_only – if we don’t want to run the SingleSliceRunner but only return them. Use case: we want to keep a hand on processing and it can be cancelled

Return type:

tuple

Returns:

(all_succeed, stdouts, stderrs, final_configs, future_scan) * all_succeed: bool, True if all the reconstruction succeed or if all job request succeed. * stdouts: list of stdout of job reconstruction or job requests * stderrs: list of stderr of job reconstruction or job requests * final_configs: list of configurations submits to nabu * future_scan: Optional[FutureTomwerScan] future scan containing futures pointing to job submited to the cluster. None if local reconstruction

Behavior: will clear the last slices reconstructed