tomwer z-stitching#
Purpose#
Open an interface to define and launch stitching along the z-axis (also known as axis 2). Stitching can be done on projections (Nxtomo) or reconstructed volumes.
Usage#
Unable to load skimage. Please install it if you want to use it for finding shifts from `find_relative_shifts`
usage: tomwer z-stitching [-h] [--debug] [--config CONFIG_FILE]
[--use-opengl-plot] [--inspect] [--check-scans]
[tomo_objs ...]
Common module for y and z stitcher
positional arguments:
tomo_objs All tomo objects to be stitched together
options:
-h, --help show this help message and exit
--debug Set logging system in debug mode
--config CONFIG_FILE, --config-file CONFIG_FILE
Provide stitching configuration file to load
parameters from it
--use-opengl-plot, --opengl-backend
Use OpenGL for plots (instead of matplotlib)
--inspect Set up stitching to be oriented 'stitching' inspected.
--check-scans If True will check scans before adding them. This
check scan validity (virtual dataset contains data...)
Example#
tomwer z-stitching dataset000?.nx
tomwer z-stitching vol*.hdf5